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• Single cell RNA-Seq analysis of de novo or published datasets

  • Object creation, QC, integration (Seurat, Scanpy)

  • Gene regulatory network analysis (Scenic)

  • Receptor:ligand interaction analysis (Cellchat, LIANA)

  • Trajectory inference (Monocle3, Cellrank)

  • DEG mining with functional annotation tools    

• Spatial Transcriptomic analysis

  • Object creation, QC, integration (Seurat)​

  • scRNA-seq overlay for cell identification (Seurat) 

• Multiplex Immunofluorescence analysis (mIF)

  • Cell identification, classifier training (Qupath)​

  • Computational multicell analyses (Qupath)

• Publication quality PDFs of results. 

  • ​Including Photoshop, illustrator services​

• Project / manuscript development around novel bioinformatics results.

  • Including model development and illustration  ​